Help:ReplaceMolecule: Difference between revisions
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===== Molecule is faulty (missing charge, wrong CO bond, missing counter ion, too many H…) ===== | ===== Molecule is faulty (missing charge, wrong CO bond, missing counter ion, too many H…) ===== | ||
# Set template “Faulty molecule” on page (Insert > Templates > Faulty molecule) | # Set template “Faulty molecule” on page (Edit mode > Insert > Templates > Faulty molecule) | ||
# Open molecule page | # Open molecule page | ||
# Remove abbreviation (save for later use on correct molecule) | # Remove abbreviation (save for later use on correct molecule) | ||
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## Save page: add “Fixed faulty molecule” or something similar in summary | ## Save page: add “Fixed faulty molecule” or something similar in summary | ||
## Repeat on as many pages as necessary | ## Repeat on as many pages as necessary | ||
# Add “new” molecule to the [https://docs.google.com/spreadsheets/d/1fxYfQA3uo5vMaVXReY5LyyusimdM_poe74K4oQD9hu8/edit#gid=0 list] | # Add “new” molecule to the [https://docs.google.com/spreadsheets/d/1fxYfQA3uo5vMaVXReY5LyyusimdM_poe74K4oQD9hu8/edit#gid=0 list] | ||
## enter “ok” in “valid structure” | ## enter “ok” in “valid structure” | ||
## link to new molecule from old molecule in “redirect” | ## link to new molecule from old molecule in “redirect” | ||
# Check old molecule page: it should have an empty “Molecule is used on following pages” section (or only test pages) | # Check old molecule page: it should have an empty “Molecule is used on following pages” section (or only test pages) | ||
Latest revision as of 10:11, 28 June 2024
How to replace a molecule in the wiki[edit source]
(because it is faulty or there are other issues)
Molecule just looks weird, but is correct:[edit source]
- log in (with role “editor”)
- go to molecule page, click “modify molecule” in the top right
- This opens the Modify molecule special page with the molecule pre-loaded in the editor
- redraw the molecule correctly, it must have the same InChIKey!
- Save with “modify molecule” on the bottom of the page
Molecule is faulty (missing charge, wrong CO bond, missing counter ion, too many H…)[edit source]
- Set template “Faulty molecule” on page (Edit mode > Insert > Templates > Faulty molecule)
- Open molecule page
- Remove abbreviation (save for later use on correct molecule)
- Check section “Molecule is used on following pages”
- Topic: mostly in investigation link → will change automatically with investigation, if chemform or molecule link, replace with correct molecule link
- Publication: usually chemform or molecule link, replace
- Investigation: must be changed in investigation form
- Check if molecule is part of a collection
- if the base is wrong, redo the whole collection, check for each individual molecule
- if one R-group is wrong, change it where the collection is drawn (add new correct R-group)
- With an overview on which pages it needs to be changed you can proceed:
- on the original (publication) page where the molecule was drawn, create a new chemform with the correct molecule structure (or molecule link)
- delete the faulty chemform (or molecule link)
- save the page
- go to the new molecule page and add the abbreviation
- on pages with investigations, edit the lines mentioning the molecule (remove old with little x at end of line, add new molecule ID or abbreviation, select the molecule proposed! Molecule entry must be Molecule:100xxx)
- remove “Faulty molecule” banner if all is corrected
- Save page: add “Fixed faulty molecule” or something similar in summary
- Repeat on as many pages as necessary
- Add “new” molecule to the list
- enter “ok” in “valid structure”
- link to new molecule from old molecule in “redirect”
- Check old molecule page: it should have an empty “Molecule is used on following pages” section (or only test pages)
